A selection of recent scientific publications from the research groups of the laboratory


Podda, Marco; Bonechi, Simone; Palladino, Andrea; Scaramuzzino, Mattia; Brozzi, Alessandro; Roma, Guglielmo; Muzzi, Alessandro; Priami, Corrado; Sîrbu, Alina; Bodini, Margherita

Classification of Neisseria meningitidis genomes with a bag-of-words approach and machine learning Journal Article

In: iScience, 2024.

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Pingitore, Alessandro; Zhang, Chenxiang; Vassalle, Cristina; Ferragina, Paolo; Landi, Patrizia; Mastorci, Francesca; Sicari, Rosa; Tommasi, Alessandro; Zavattari, Cesare; Prencipe, Giuseppe; others,

Machine learning to identify a composite indicator to predict cardiac death in ischemic heart disease Journal Article

In: International Journal of Cardiology, vol. 404, pp. 131981, 2024.

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Cignoni, Giacomo; Scatena, Cristian; Frascarelli, Chiara; Fusco, Nicola; Naccarato, Antonio Giuseppe; Fanelli, Giuseppe Nicoló; Sîrbu, Alina

PD-L1 Classification of Weakly-Labeled Whole Slide Images of Breast Cancer Journal Article

In: arXiv preprint arXiv:2404.10175, 2024.

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Pernice, Simone; Maglione, Alessandro; Tortarolo, Dora; Sirovich, Roberta; Clerico, Marinella; Rolla, Simona; Beccuti, Marco; Cordero, Francesca

A new computational workflow to guide personalized drug therapy Journal Article

In: Journal of Biomedical Informatics, vol. 148, pp. 104546, 2023, ISSN: 1532-0464.

Abstract | Links | BibTeX

Testa, Irene; Prencipe, Giuseppe; Priami, Corrado; Sîrbu, Alina

Comparison of Machine Learning Classifiers on Integrated Transcriptomic Data Proceedings Article

In: 2023 IEEE International Conference on Big Data (BigData), pp. 4987–4996, IEEE 2023.

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Sîrbu, Alina; Barbieri, Greta; Faita, Francesco; Ferragina, Paolo; Gargani, Luna; Ghiadoni, Lorenzo; Priami, Corrado

Early outcome detection for COVID-19 patients Journal Article

In: Scientific Reports, vol. 11, no. 1, pp. 18464, 2021.

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Prezza, Nicola; Pisanti, Nadia; Sciortino, Marinella; Rosone, Giovanna

Variable-order reference-free variant discovery with the Burrows-Wheeler Transform Journal Article

In: BMC Bioinformatics, vol. 21, no. S8, 2020.

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Guerrini, Veronica; Louza, Felipe A; Rosone, Giovanna

Metagenomic analysis through the extended Burrows-Wheeler transform Journal Article

In: BMC Bioinformatics, vol. 21, no. S8, 2020.

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Kocian, Alexander; Carmassi, Giulia; Cela, Fatjon; Incrocci, Luca; Milazzo, Paolo; Chessa, Stefano

Bayesian Sigmoid-Type Time Series Forecasting with Missing Data for Greenhouse Crops Journal Article

In: Sensors, vol. 20, no. 11, pp. 3246, 2020.

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Kocian, Alexander; Massa, Daniele; Cannazzaro, Samantha; Incrocci, Luca; Lonardo, Sara Di; Milazzo, Paolo; Chessa, Stefano

Dynamic Bayesian network for crop growth prediction in greenhouses Journal Article

In: Computers and Electronics in Agriculture, vol. 169, pp. 105167, 2020.

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Barbuti, Roberto; Gori, Roberta; Milazzo, Paolo

Encoding Boolean networks into reaction systems for investigating causal dependencies in gene regulation Journal Article

In: Theoretical Computer Science, 2020.

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Muscolino, Alessandro; Maria, Antonio Di; Alaimo, Salvatore; Borzì, Stefano; Ferragina, Paolo; Ferro, Alfredo; Pulvirenti, Alfredo

NETME: On-the-fly knowledge network construction from biomedical literature Book Section

In: International Conference on Complex Networks and their Applications (COMPLEX), Springer International Publishing, 2020.


Ferragina, Paolo; Vinciguerra, Giorgio

The PGM-index: a fully-dynamic compressed learned index with provable worst-case bounds Journal Article

In: Proceedings of the VLDB Endowment, vol. 13, no. 10, pp. 1162–1175, 2020.

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Rossi, Alessio; Pozzo, Eleonora Da; Menicagli, Dario; Tremolanti, Chiara; Priami, Corrado; Sirbu, Alina; Clifton, David A; Martini, Claudia; Morelli, Davide

A Public Dataset of 24-h Multi-Levels Psycho-Physiological Responses in Young Healthy Adults Journal Article

In: Data, vol. 5, no. 4, pp. 91, 2020.

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Ferrari, Elisa; Retico, Alessandra; Bacciu, Davide

Measuring the effects of confounders in medical supervised classification problems: the Confounding Index (CI) Journal Article

In: Artificial Intelligence in Medicine, vol. 103, pp. 101804, 2020.

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Bove, Pasquale; Micheli, Alessio; Milazzo, Paolo; Podda, Marco

Prediction of Dynamical Properties of Biochemical Pathways with Graph Neural Networks Proceedings Article

In: Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, SCITEPRESS - Science and Technology Publications, 2020.

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Torrado, Juan C; Wold, Ida; Jaccheri, Letizia; Pelagatti, Susanna; Chessa, Stefano; Gomez, Javier; Hartvigsen, Gunnar; Michalsen, Henriette

Developing Software for Motivating Individuals with Intellectual Disabilities to Do Outdoor Physical Activity Proceedings Article

In: Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering: Software Engineering in Society, pp. 81–84, Association for Computing Machinery, Seoul, South Korea, 2020, ISBN: 9781450371244.

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Kocian, Alexander; Chessa, Stefano; Grolman, Wilko

Monitoring Practitioner's Skills in Pure-Tone Audiometry Journal Article

In: International Journal of E-Health and Medical Communications, vol. 11, no. 2, pp. 38–63, 2020.

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Pappalardo, Luca; Cintia, Paolo; Ferragina, Paolo; Massucco, Emanuele; Pedreschi, Dino; Giannotti, Fosca

PlayeRank: Data-driven Performance Evaluation and Player Ranking in Soccer via a Machine Learning Approach Journal Article

In: ACM Transactions on Intelligent Systems and Technology, vol. 10, no. 5, pp. 1–27, 2019.

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Misselbeck, Karla; Parolo, Silvia; Lorenzini, Francesca; Savoca, Valeria; Leonardelli, Lorena; Bora, Pranami; Morine, Melissa J; Mione, Maria Caterina; Domenici, Enrico; Priami, Corrado

A network-based approach to identify deregulated pathways and drug effects in metabolic syndrome Journal Article

In: Nature Communications, vol. 10, no. 1, 2019.

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Morelli, Davide; Rossi, Alessio; Cairo, Massimo; Clifton, David A

Analysis of the Impact of Interpolation Methods of Missing RR-intervals Caused by Motion Artifacts on HRV Features Estimations Journal Article

In: Sensors, vol. 19, no. 14, pp. 3163, 2019.

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Bondioli, Mariasole; Chessa, Stefano; Narzisi, Antonio; Pelagatti, Susanna; Piotrowicz, Dario

Capturing Play Activities of Young Children to Detect Autism Red Flags Book Section

In: Advances in Intelligent Systems and Computing, pp. 71–79, Springer International Publishing, 2019.

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Ciuffoletti, Augusto

Design of an Open Remote Electrocardiogram (ECG) Service Journal Article

In: Future Internet, vol. 11, no. 4, pp. 101, 2019.

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Rossi, Alessio; Perri, Enrico; Pappalardo, Luca; Cintia, Paolo; Iaia, Fedon Marcello

Relationship between External and Internal Workloads in Elite Soccer Players: Comparison between Rate of Perceived Exertion and Training Load Journal Article

In: Applied Sciences, vol. 9, no. 23, pp. 5174, 2019.

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Pappalardo, Luca; Cintia, Paolo; Rossi, Alessio; Massucco, Emanuele; Ferragina, Paolo; Pedreschi, Dino; Giannotti, Fosca

A public data set of spatio-temporal match events in soccer competitions Journal Article

In: Scientific Data, vol. 6, no. 1, 2019.

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Simoni, Giulia; Vo, Hong Thanh; Priami, Corrado; Marchetti, Luca

A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology Journal Article

In: Briefings in Bioinformatics, vol. 21, no. 2, pp. 527–540, 2019.

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Franco, Giuseppe; Cerina, Luca; Gallicchio, Claudio; Micheli, Alessio; Santambrogio, Marco Domenico

Continuous Blood Pressure Estimation Through Optimized Echo State Networks Book Section

In: Artificial Neural Networks and Machine Learning – ICANN 2019: Workshop and Special Sessions, pp. 48–61, Springer International Publishing, 2019.

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Podda, Marco; Bacciu, Davide; Micheli, Alessio; Bellu, Roberto; Placidi, Giulia; Gagliardi, Luigi

A machine learning approach to estimating preterm infants survival: development of the Preterm Infants Survival Assessment (PISA) predictor Journal Article

In: Scientific Reports, vol. 8, no. 1, 2018.

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Bacciu, Davide; Colombo, Michele; Morelli, Davide; Plans, David

Randomized neural networks for preference learning with physiological data Journal Article

In: Neurocomputing, vol. 298, pp. 9–20, 2018.

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Burchi, Gianluca; Chessa, Stefano; Gambineri, Francesca; Kocian, Alexander; Massa, Daniele; Milazzo, Paolo; Rimediotti, Luca; Ruggeri, Alessandro

Information technology controlled greenhouse: A system architecture Proceedings Article

In: 2018 IoT Vertical and Topical Summit on Agriculture - Tuscany (IOT Tuscany), IEEE, 2018.

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Cappanera, Paola; Scutellà, Maria Grazia; Nervi, Federico; Galli, Laura

Demand uncertainty in robust Home Care optimization Journal Article

In: Omega, vol. 80, pp. 95–110, 2018.

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Rossi, Alessio; Pappalardo, Luca; Cintia, Paolo; Iaia, Fedon Marcello; Fernandez, Javier; Medina, Daniel

Effective injury forecasting in soccer with GPS training data and machine learning Journal Article

In: PLOS ONE, vol. 13, no. 7, pp. e0201264, 2018.

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Gallicchio, Claudio; Micheli, Alessio; Pedrelli, Luca

Deep Echo State Networks for Diagnosis of Parkinson's Disease Book Section

In: ESANN 2018, 2018.

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Palumbo, Filippo; Rosa, Davide La; Ferro, Erina; Bacciu, Davide; Gallicchio, Claudio; Micheli, Alessio; Chessa, Stefano; Vozzi, Federico; Parodi, Oberdan

Reliability and human factors in Ambient Assisted Living environments Journal Article

In: Journal of Reliable Intelligent Environments, vol. 3, no. 3, pp. 139–157, 2017.

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Cappanera, Paola; Scutellà, Maria Grazia

Pattern Generation Policies to Cope with Robustness in Home Care Book Section

In: Springer Proceedings in Mathematics & Statistics, pp. 257–268, Springer International Publishing, 2017.

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Consortium, The Computational Pan-Genomics

Computational pan-genomics: status, promises and challenges Journal Article

In: Briefings in Bioinformatics, pp. bbw089, 2016.

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Barbuti, Roberto; Gori, Roberta; Levi, Francesca; Milazzo, Paolo

Investigating dynamic causalities in reaction systems Journal Article

In: Theoretical Computer Science, vol. 623, pp. 114–145, 2016.

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Sameen, Sheema; Barbuti, Roberto; Milazzo, Paolo; Cerone, Antonio; Re, Marzia Del; Danesi, Romano

Mathematical modeling of drug resistance due to KRAS mutation in colorectal cancer Journal Article

In: Journal of Theoretical Biology, vol. 389, pp. 263–273, 2016.

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Yalçindağ, Semih; Cappanera, Paola; Scutellà, Maria Grazia; Şahin, Evren; Matta, Andrea

Pattern-based decompositions for human resource planning in home health care services Journal Article

In: Computers & Operations Research, vol. 73, pp. 12–26, 2016.

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Grossi, Roberto; Iliopoulos, Costas S; Mercas, Robert; Pisanti, Nadia; Pissis, Solon P; Retha, Ahmad; Vayani, Fatima

Circular sequence comparison: algorithms and applications Journal Article

In: Algorithms for Molecular Biology, vol. 11, no. 1, 2016.

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Patterson, Murray; Marschall, Tobias; Pisanti, Nadia; van Iersel, Leo; Stougie, Leen; Klau, Gunnar W; Schönhuth, Alexander

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads Journal Article

In: Journal of Computational Biology, vol. 22, no. 6, pp. 498–509, 2015.

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Cappanera, Paola; Scutellà, Maria Grazia

Joint Assignment, Scheduling, and Routing Models to Home Care Optimization: A Pattern-Based Approach Journal Article

In: Transportation Science, vol. 49, no. 4, pp. 830–852, 2015.

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Cappanera, Paola; Scutellà, Maria Grazia

Home Care optimization: impact of pattern generation policies on scheduling and routing decisions Journal Article

In: Electronic Notes in Discrete Mathematics, vol. 41, pp. 53–60, 2013.

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Barbuti, Roberto; Levi, Francesca; Milazzo, Paolo; Scatena, Guido

Probabilistic model checking of biological systems with uncertain kinetic rates Journal Article

In: Theoretical Computer Science, vol. 419, pp. 2–16, 2012.

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